![]() ![]() Apart from the sophisticated graph layout and visualization routines, its main strength is in providing an API that allows developers other than its core authors to produce extension plugins. It also enables seamless integration of ITM Probe results with other Cytoscape plugins having complementary functionality for data analysis.Ĭytoscape is a popular and flexible platform for visualization, integration and analysis of network data. ![]() ![]() Consequently, as opposed to ITM Probe web service, CytoITMprobe can be applied to many other domains of network-based research beyond protein-networks. Users may supply their own edge weights and directionalities. It allows the user to specify as input any Cytoscape network, rather than being restricted to the pre-compiled protein-protein interaction networks available through the ITM Probe web service. The main strength of CytoITMprobe is its flexibility. Users can control the composition and appearance of the subnetwork and interchange their ITM Probe results with other software tools through tab-delimited files. The results are shown as a subnetwork of significant nodes and several summary tables. The input, consisting of a Cytoscape network, together with the desired origins and/or destinations of information and a dissipation coefficient, is specified through a query form. It provides access to ITM Probe either through a web server or locally. FindingsĬytoITMprobe maintains all the desirable features of ITM Probe and adds additional flexibility not achievable through its web service version. To provide the Cytoscape users the possibility of integrating ITM Probe into their workflows, we developed CytoITMprobe, a new Cytoscape plugin. However, plugins for Cytoscape with these features do not yet exist. It requires neither user restriction to subnetwork of interest nor additional and possibly noisy information. Given a context consisting of one or more user-selected nodes, ITM Probe retrieves other network nodes most related to that context. Earlier, we developed a network information flow framework and implemented it as a web application, called ITM Probe. Apart from the sophisticated graph layout and visualization routines, it hosts numerous user-developed plugins that significantly extend its core functionality. Cytoscape is a well-developed flexible platform for visualization, integration and analysis of network data. ![]()
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |